Homemade Healthier Pop Tarts (Gluten-Free + How-To Video)

Ever wonder how to make Homemade Healthier Pop Tarts? I’ve been dreaming of making a healthier pop tarts recipe for some time now, and we’ve finally got the homemade pop tart recipe just right for you! This homemade pop tart recipe is gluten-free and grain-free, and pairs wonderfully with my homemade chia seed jam. Frost and enjoy!

Homemade Pop Tarts (Paleo) - Lexi's Clean KitchenHomemade Healthier Pop Tarts

Growing up, I absolutely loved pop tarts. S’mores, Strawberry Frosted, and Cherry Frosted were my favorites. I’ve been wanting to make my own paleo version to enjoy, and with much anticipation, they are finally here!

Homemade Pop Tarts (Paleo) - Lexi's Clean Kitchen

Homemade Pop Tart Recipe

We are in love with this Homemade Healthier Pop Tarts recipe! This pop tart crust is based off of my pie crust recipe. For all the versions we tested, this is my absolute favorite! It takes a little prep work, but then you’ll have pop tarts and you’ll be winning at your weekend brunch or mid-day snack break!

Homemade Pop Tarts (Paleo) - Lexi's Clean Kitchen

You will LOVE these Healthy Homemade Pop Tarts! You can make the jam filling into any flavor you’d like: strawberry, raspberry, blueberry, etc. They would even be great with my homemade nutella!

Homemade Pop Tarts frosted

Want other breakfast treat recipes? Try these:

Homemade Pop Tarts With Pie Crust

Homemade Pop Tarts (Paleo) - Lexi's Clean Kitchen

Watch the video:

Homemade Pop Tarts

Prep Time 00:30 Cook Time 00:15 Inactive Time 4 hours Total Time 01:00 Yields 6


1 Batch Lexi’s dough

1 Batch Homemade Jam

  • 2 cups fresh organic blueberries, strawberries, or fruit of joice
  • 2 tablespoons raw honey
  • 2 tablespoons lemon juice
  • 2 tablespoons chia seeds



Make dough, chill overnight:

  1. In a food processor combine almond flourtapioca flour, cold butter, and sea salt.
  2. Add in sugar and egg and process until dough combines.
  3. Transfer dough to refrigerator overnight.

Make jam, chill:

  1. Add blueberries, honey and lemon juice to a pot and stir until combined.
  2. Over medium-low heat cook until blueberries are soft and bubbling, about 5 minutes.
  3. Lightly smash blueberries and reduce heat.
  4. Add in chia seeds and mix to combine. If you're using raspberries, or a berry with lots of seeds, reduce chia seeds to 1 tablespoon. 
  5. Bring heat back to medium-low and let it simmer, stirring frequently to prevent burning, until jam thickens, about 5 minutes.
  6. Turn heat off and let cool for 5-10 minutes before transferring to jars.

Roll Dough:

  1. Between two sheets of parchment, GENTLY roll out dough evenly to 1/8th- ¼th inch thickness. Use knife or pizza cutter to cut rectangles 4” by 2.5”. The dough should yield 12 squares. You may have to reroll scraps to get this many 2 or 3 times.
  2. Preheat oven to 350ºF.
  3. Gently place 6 pieces of dough on parchment on sheet pan. Place the remaining 6 on a separate sheet of parchment and stack on top. Place dough in the refrigerator on pan to chill for 30 minutes.
  4. Place 1 heaping tablespoon of jam in the center of the dough, repeat for 6 total.
  5. Use a pastry brush to brush water along the edges of the dough. Top each poptart with the remaining dough rectangles. Press your fingers along the edge to seal.
  6. Use a fork to crimp the edges.
  7. Bake at 350ºF for 12-15 minutes until the crust is golden brown. Let cool.

To Glaze:

  1. In a bowl whisk together powdered sugar, milk and extract.
  2. Dip or drizzle glaze onto the cooled pop tarts.

Store in the refrigerator for 1 week or freeze for up to 3 months.

Recipe Notes

  1. If you cannot tolerate butter, sub ghee or coconut oil in the crust, but butter is preferred.
  2. I like this powdered sugar. Feel free to omit for paleo.
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